PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G050200.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 348aa    MW: 37810.2 Da    PI: 6.6096
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G050200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.5e-18192285294
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +kvl++sdv+++gr+vlpk+  e+h  ++k++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++n+L+egDf+v++  ++
  Brast01G050200.2.p 192 QKVLKQSDVGSLGRIVLPKEA-ETHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SD 278
                         79****************995.7888*999***********7778*******99777777777777.*******************9..55 PP

                         SEE..EE CS
                  B3  88 sefelvv 94 
                          ++++++
  Brast01G050200.2.p 279 VKGRYLI 285
                         5555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-24185282IPR015300DNA-binding pseudobarrel domain
CDDcd100155.13E-34189288No hitNo description
SuperFamilySSF1019365.36E-20190284IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.925191291IPR003340B3 DNA binding domain
SMARTSM010192.2E-14191291IPR003340B3 DNA binding domain
PfamPF023624.2E-15192283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDASAGSPPP PHSQQNHGGG GRPGKAPVGE IRAGEASPDE FLFADDTFPS LPDFPCLSSP  60
SSSTFSSSSS AFTAATTGGE QHSAAAEDGI DALADLDQLL DFASLSVPSW EDEPLCPDDV  120
GMMLEDAMSD DHKPPARRSW MGAPSHRRPQ IRSGRITRDF FSLEARTSLS GDRDPRGANT  180
KPADKNLRFL LQKVLKQSDV GSLGRIVLPK EAETHLPELK TRDGISIPME DIGTSRVWNM  240
RYRFWPNNKS RMYLLENTGD FVRSNELQEG DFIVIYSDVK GRYLIRGVKV RPVQDQAGKH  300
KHGIPGNRGG ASDVKTGPED RGCKEKSPHG AQRSRQEATG TMMAVRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0011401e-122AJ001140.1 Avena fatua mRNA for VIVIPAROUS 1 homologue transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232722.11e-111PREDICTED: B3 domain-containing protein VP1 isoform X1
SwissprotP373981e-75VIV_ORYSJ; B3 domain-containing protein VP1
TrEMBLA0A0Q3GJ351e-111A0A0Q3GJ35_BRADI; Uncharacterized protein
STRINGBRADI2G58390.11e-109(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-60B3 family protein